Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_1900RbsD or FucU transport; Belongs to the RbsD / FucU family. (150 aa)    
Predicted Functional Partners:
Rfer_1899
ROK.
 
     0.929
Rfer_1901
ABC transporter related.
 
     0.894
Rfer_1902
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.844
Rfer_1903
Periplasmic binding protein/LacI transcriptional regulator.
 
     0.760
Rfer_1904
PfkB.
 
     0.580
Rfer_0342
Aldo/keto reductase.
 
     0.540
Rfer_3750
L-fuculose-phosphate aldolase.
 
  
 0.470
Rfer_3131
Periplasmic binding protein/LacI transcriptional regulator.
 
     0.468
Rfer_2334
Carbohydrate kinase, FGGY.
  
  
 0.467
Rfer_1898
Conserved hypothetical protein.
       0.452
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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