Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_1908PhoH-like protein. (605 aa)    
Predicted Functional Partners:
Rfer_1907
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
   
 0.806
Rfer_1906
UDP-galactopyranose mutase.
  
    0.676
Rfer_1909
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen.
  
    0.660
gluQ
Glutamate--tRNA ligase; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily.
       0.633
Rfer_1910
Protein of unknown function DUF498.
 
     0.574
Rfer_2217
Putative serine protein kinase, PrkA.
  
  
 0.530
Rfer_2216
Protein of unknown function DUF444; Belongs to the UPF0229 family.
   
    0.506
Rfer_2215
SpoVR.
   
    0.492
Rfer_2082
RNAse G.
  
    0.464
Rfer_3598
Protein translocase subunit secE/sec61 gamma; Belongs to the SecE/SEC61-gamma family.
  
     0.436
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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