STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_1925AMP-dependent synthetase and ligase. (500 aa)    
Predicted Functional Partners:
Rfer_0880
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.915
Rfer_0986
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.915
Rfer_1025
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.915
Rfer_3228
Delta-1-piperideine-6-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.915
Rfer_3585
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.915
Rfer_2805
methylmalonyl-CoA mutase.
    
 0.909
Rfer_0158
Amidase, hydantoinase/carbamoylase.
   
 
  0.803
Rfer_0165
Amidase, hydantoinase/carbamoylase.
   
 
  0.803
Rfer_1924
Enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.676
Rfer_3270
NADH dehydrogenase (quinone).
  
 
 
 0.649
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.