Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_1950Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily. (334 aa)    
Predicted Functional Partners:
Rfer_1952
Binding-protein-dependent transport systems inner membrane component.
 0.997
Rfer_1953
Binding-protein-dependent transport systems inner membrane component.
 
 0.992
Rfer_1949
Extracellular solute-binding protein, family 5.
 
 0.988
Rfer_1951
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily.
 
 
0.985
Rfer_3105
Binding-protein-dependent transport systems inner membrane component.
 
 0.944
Rfer_0932
Binding-protein-dependent transport systems inner membrane component.
 
 0.937
Rfer_0983
Binding-protein-dependent transport systems inner membrane component.
 
 0.919
Rfer_0933
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.883
Rfer_0984
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.883
Rfer_3104
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.881
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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