Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rfer_1964Putative dehydrogenase. (710 aa)    
Predicted Functional Partners:
Rfer_3528
Patatin.
  
     0.640
Rfer_2360
Conserved hypothetical protein.
   
 
 0.596
Rfer_4137
Conserved hypothetical protein.
   
 
 0.596
Rfer_1184
Putative uncharacterized conserved protein; Belongs to the SOS response-associated peptidase family.
  
     0.567
Rfer_3054
Putative uncharacterized conserved protein; Belongs to the SOS response-associated peptidase family.
  
     0.560
Rfer_1965
Iron-containing alcohol dehydrogenase.
       0.504
Rfer_1963
Protein of unknown function DUF125, transmembrane.
       0.459
Rfer_0743
Conserved hypothetical protein.
  
     0.412
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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