Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_1978PAS/PAC sensor signal transduction histidine kinase. (553 aa)    
Predicted Functional Partners:
Rfer_1768
Multi-sensor hybrid histidine kinase.
 
 
0.933
Rfer_1980
Response regulator receiver modulated metal dependent phosphohydrolase.
 
 
 
 0.922
Rfer_2356
PAS/PAC sensor hybrid histidine kinase.
 
 
 0.911
Rfer_3548
PAS/PAC sensor hybrid histidine kinase.
 
 
 0.903
Rfer_2271
PAS/PAC sensor hybrid histidine kinase.
 
 
0.887
Rfer_3398
Periplasmic sensor hybrid histidine kinase.
  
 
 0.844
Rfer_2038
Periplasmic sensor hybrid histidine kinase.
  
 
 0.837
Rfer_1979
Metal dependent phosphohydrolase.
 
  
 0.818
Rfer_2263
Periplasmic sensor hybrid histidine kinase.
 
 
 
 0.799
Rfer_1982
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
  
 
 0.780
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
Server load: low (28%) [HD]