STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_1979Metal dependent phosphohydrolase. (431 aa)    
Predicted Functional Partners:
Rfer_1978
PAS/PAC sensor signal transduction histidine kinase.
 
  
 0.819
Rfer_0891
Metal dependent phosphohydrolase.
 
    0.774
Rfer_1980
Response regulator receiver modulated metal dependent phosphohydrolase.
 
   
0.602
Rfer_3932
Diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s).
 
 
 0.545
Rfer_1981
Metal dependent phosphohydrolase.
 
   0.529
Rfer_1982
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
 0.528
Rfer_1983
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s).
 
   
 0.451
Rfer_0900
Anti-sigma-factor antagonist (STAS) domain protein.
  
 
   0.435
Rfer_3626
Diguanylate cyclase with PAS/PAC sensor.
 
   0.431
Rfer_1825
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
  
 0.429
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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