STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_1985Beta-lactamase-like. (295 aa)    
Predicted Functional Partners:
Rfer_1986
Metal dependent phosphohydrolase.
 
     0.865
nnrE
Protein of unknown function UPF0031; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the rep [...]
 
     0.853
Rfer_1987
D-amino-acid dehydrogenase.
       0.602
Rfer_0140
Phosphonate C-P lyase system, PhnL.
  
  
 0.572
Rfer_2284
Putative adenylate/guanylate cyclase.
 
     0.561
Rfer_1611
Radical SAM.
  
  
 0.543
Rfer_0139
Phosphonate metabolism PhnM.
  
  
 0.540
Rfer_3025
Cyclic nucleotide-binding domain (cNMP-BD) protein.
 
     0.527
Rfer_3777
DNA polymerase III, epsilon subunit.
  
  
 0.494
Rfer_1983
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s).
       0.488
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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