Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_2016Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s). (874 aa)    
Predicted Functional Partners:
Rfer_3932
Diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s).
 
 
0.934
Rfer_1768
Multi-sensor hybrid histidine kinase.
  
 
 0.912
Rfer_1825
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
0.878
Rfer_2262
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
0.876
Rfer_0895
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
0.853
Rfer_1982
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
0.850
Rfer_3250
Diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s).
 
 
0.848
Rfer_2257
Type IV pilus assembly PilZ.
    
 
 0.826
Rfer_1983
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s).
 
 
0.822
Rfer_3893
Periplasmic sensor diguanylate cyclase/phosphodiesterase.
 
 
0.806
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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