Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
Rfer_2128Extracellular solute-binding protein, family 5. (603 aa)    
Predicted Functional Partners:
Rfer_2129
Binding-protein-dependent transport systems inner membrane component.
 
  
 0.972
Rfer_2130
Binding-protein-dependent transport systems inner membrane component.
 
  
 0.971
Rfer_2131
ABC transporter related; Belongs to the ABC transporter superfamily.
 
  
 0.957
Rfer_3102
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily.
 
 
 0.859
Rfer_1953
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.790
Rfer_0933
Binding-protein-dependent transport systems inner membrane component.
  
 
 0.755
Rfer_0984
Binding-protein-dependent transport systems inner membrane component.
  
 
 0.755
Rfer_3104
Binding-protein-dependent transport systems inner membrane component.
  
 
 0.755
Rfer_2127
Enoyl-[acyl-carrier-protein] reductase (NADH).
  
    0.658
rimP
Protein of unknown function DUF150; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
 
  
 0.598
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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