Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_2170Hypothetical protein. (737 aa)    
Predicted Functional Partners:
Rfer_3437
Hypothetical protein.
  
 
   0.756
xseB
Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
 
 0.751
Rfer_2207
Hypothetical protein.
  
     0.720
Rfer_1420
Response regulator receiver domain protein.
  
     0.690
Rfer_1791
Peptidoglycan-binding LysM.
  
    0.660
Rfer_0363
Hemerythrin HHE cation binding protein.
  
     0.655
Rfer_3167
Sporulation related.
  
     0.651
Rfer_1655
Conserved hypothetical protein.
  
     0.647
Rfer_2171
ABC transporter related.
       0.637
Rfer_2530
Protein of unknown function DUF58.
  
     0.612
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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