STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_2185Pyruvate ferredoxin oxidoreductase, beta subunit. (330 aa)    
Predicted Functional Partners:
Rfer_2186
Pyruvate ferredoxin oxidoreductase, alpha subunit.
 0.999
Rfer_3209
Pyruvate flavodoxin/ferredoxin oxidoreductase-like.
 
0.999
Rfer_2187
Pyruvate ferredoxin oxidoreductase, gamma subunit.
 
 0.997
Rfer_2799
Pyruvate flavodoxin/ferredoxin oxidoreductase-like.
 
 0.997
Rfer_2184
2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate.
 
 
 0.966
Rfer_0262
Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
   
 0.946
Rfer_0093
Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); Phosphate acetyltransferase.
   
 0.945
Rfer_1424
Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+); Phosphate acetyltransferase.
   
 0.945
Rfer_4088
Hydrogenase (NiFe) small subunit (hydA).
   
 
 0.927
Rfer_4120
Uptake hydrogenase accessory protein HupU.
   
 
 0.927
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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