Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_2192Na+/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (769 aa)    
Predicted Functional Partners:
Rfer_3781
Protein of unknown function DUF485.
 
  
 0.902
Rfer_3783
Cyclic nucleotide-binding domain (cNMP-BD) protein.
 
  
 0.712
Rfer_2191
Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.
     
 0.707
rpsF
SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.
       0.593
Rfer_2322
Propionate--CoA ligase.
 
  
 0.581
Rfer_3777
DNA polymerase III, epsilon subunit.
 
   
 0.560
priB
Putative primosomal replication protein; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.
       0.543
Rfer_0216
benzoate-CoA ligase.
  
  
 0.519
Rfer_0388
AMP-dependent synthetase and ligase.
  
  
 0.519
Rfer_2581
Acetyl-coenzyme A synthetase.
  
  
 0.519
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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