Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Rfer_1569 | Rfer_2248 | Rfer_1569 | Rfer_2248 | Prephenate dehydratase / chorismate mutase. | Bacterial nucleoid protein Hbs; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.551 |
| Rfer_1569 | Rfer_2780 | Rfer_1569 | Rfer_2780 | Prephenate dehydratase / chorismate mutase. | Peptidase M23B. | 0.407 |
| Rfer_1569 | ihfA | Rfer_1569 | Rfer_1342 | Prephenate dehydratase / chorismate mutase. | Integration host factor, alpha subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.551 |
| Rfer_1569 | rplU | Rfer_1569 | Rfer_1268 | Prephenate dehydratase / chorismate mutase. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.519 |
| Rfer_1569 | rpsO | Rfer_1569 | Rfer_1488 | Prephenate dehydratase / chorismate mutase. | SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.687 |
| Rfer_1569 | rpsT | Rfer_1569 | Rfer_2122 | Prephenate dehydratase / chorismate mutase. | SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA. | 0.463 |
| Rfer_2245 | Rfer_2248 | Rfer_2245 | Rfer_2248 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | Bacterial nucleoid protein Hbs; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.590 |
| Rfer_2245 | Rfer_2249 | Rfer_2245 | Rfer_2249 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | PpiC-type peptidyl-prolyl cis-trans isomerase. | 0.494 |
| Rfer_2248 | Rfer_1569 | Rfer_2248 | Rfer_1569 | Bacterial nucleoid protein Hbs; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Prephenate dehydratase / chorismate mutase. | 0.551 |
| Rfer_2248 | Rfer_2245 | Rfer_2248 | Rfer_2245 | Bacterial nucleoid protein Hbs; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.590 |
| Rfer_2248 | Rfer_2249 | Rfer_2248 | Rfer_2249 | Bacterial nucleoid protein Hbs; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | PpiC-type peptidyl-prolyl cis-trans isomerase. | 0.626 |
| Rfer_2248 | Rfer_2780 | Rfer_2248 | Rfer_2780 | Bacterial nucleoid protein Hbs; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Peptidase M23B. | 0.517 |
| Rfer_2248 | acpP | Rfer_2248 | Rfer_1733 | Bacterial nucleoid protein Hbs; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | 0.608 |
| Rfer_2248 | dnaA | Rfer_2248 | Rfer_0001 | Bacterial nucleoid protein Hbs; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.680 |
| Rfer_2248 | ihfA | Rfer_2248 | Rfer_1342 | Bacterial nucleoid protein Hbs; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Integration host factor, alpha subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.736 |
| Rfer_2248 | rplU | Rfer_2248 | Rfer_1268 | Bacterial nucleoid protein Hbs; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.564 |
| Rfer_2248 | rpsO | Rfer_2248 | Rfer_1488 | Bacterial nucleoid protein Hbs; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.576 |
| Rfer_2248 | rpsT | Rfer_2248 | Rfer_2122 | Bacterial nucleoid protein Hbs; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA. | 0.589 |
| Rfer_2249 | Rfer_2245 | Rfer_2249 | Rfer_2245 | PpiC-type peptidyl-prolyl cis-trans isomerase. | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.494 |
| Rfer_2249 | Rfer_2248 | Rfer_2249 | Rfer_2248 | PpiC-type peptidyl-prolyl cis-trans isomerase. | Bacterial nucleoid protein Hbs; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.626 |
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