STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_2289Putative transmembrane protein. (173 aa)    
Predicted Functional Partners:
Rfer_1742
Putative transmembrane protein.
  
     0.770
Rfer_3437
Hypothetical protein.
  
     0.767
Rfer_1373
CheW-like protein.
  
     0.759
Rfer_3812
Activator of osmoprotectant transporter.
  
     0.754
Rfer_1375
CheA signal transduction histidine kinases.
  
     0.750
Rfer_2980
Conserved hypothetical signal peptide protein.
  
     0.750
Rfer_3864
Hypothetical protein.
  
    0.738
Rfer_2008
Conserved hypothetical protein.
  
     0.737
Rfer_2207
Hypothetical protein.
  
     0.718
Rfer_1655
Conserved hypothetical protein.
  
     0.712
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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