STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_2371Alpha/beta hydrolase. (307 aa)    
Predicted Functional Partners:
Rfer_2372
Protein of unknown function DUF328; Belongs to the UPF0246 family.
       0.729
queF
GTP cyclohydrolase I; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
       0.725
Rfer_1475
Diacylglycerol O-acyltransferase.
  
     0.663
Rfer_2145
AMP-dependent synthetase and ligase.
  
 
 0.621
Rfer_0505
Diacylglycerol O-acyltransferase.
  
     0.602
Rfer_0323
Alpha/beta hydrolase.
 
 
 
 0.585
Rfer_3848
Molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
    0.543
Rfer_1474
Conserved hypothetical protein.
 
   
 0.534
Rfer_2373
Conserved hypothetical protein.
   
   0.495
Rfer_0311
Alpha/beta hydrolase.
  
     0.460
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.