Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_2371Alpha/beta hydrolase. (307 aa)    
Predicted Functional Partners:
Rfer_2372
Protein of unknown function DUF328; Belongs to the UPF0246 family.
       0.739
queF
GTP cyclohydrolase I; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
     
 0.715
Rfer_1475
Diacylglycerol O-acyltransferase.
  
     0.663
Rfer_0505
Diacylglycerol O-acyltransferase.
  
     0.602
Rfer_0323
Alpha/beta hydrolase.
 
 
 
 0.587
Rfer_2145
AMP-dependent synthetase and ligase.
  
 
 0.581
Rfer_3848
Molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.547
Rfer_1474
Conserved hypothetical protein.
 
   
 0.532
Rfer_2282
Enoyl-CoA hydratase/isomerase.
  
  0.513
Rfer_2259
Ankyrin.
  
 0.509
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.