Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rfer_2389Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (429 aa)    
Predicted Functional Partners:
Rfer_2390
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.997
Rfer_2391
Extracellular ligand-binding receptor.
 
 
 0.992
Rfer_2392
Extracellular ligand-binding receptor.
 
 
 0.990
Rfer_2388
ABC transporter related.
  
 0.980
Rfer_2387
ABC transporter related.
 
  
 0.976
Rfer_1487
Putative transporter signal peptide protein.
 
  
 0.856
Rfer_0213
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.835
Rfer_0289
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.800
Rfer_1078
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.800
Rfer_2588
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.797
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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