Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_2407Citrate lyase, alpha subunit. (512 aa)    
Predicted Functional Partners:
Rfer_2408
Citrate lyase, beta subunit; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.997
Rfer_2406
Holo-citrate lyase synthase.
 
  
 0.996
citD
Citrate lyase acyl carrier protein; Covalent carrier of the coenzyme of citrate lyase.
 
  
 0.991
Rfer_2410
Citrate lyase ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.
 
  
 0.991
citG
Triphosphoribosyl-dephospho-CoA synthase.
 
  
 0.978
Rfer_4171
Citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.960
Rfer_4179
Citrate lyase; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.960
Rfer_3486
HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.921
mdcB
Triphosphoribosyl-dephospho-CoA synthase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.
 
  
 0.906
Rfer_1844
Malonate decarboxylase delta subunit.
  
  
 0.872
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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