Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rfer_2575Pirin-like; Belongs to the pirin family. (233 aa)    
Predicted Functional Partners:
Rfer_2574
DoxX.
 
  
 0.747
Rfer_2339
Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B.
 
  
 0.594
Rfer_2536
Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B.
 
  
 0.572
Rfer_2573
Putative flavodoxin.
       0.523
Rfer_2576
Esterase, PHB depolymerase.
       0.446
azoR
(Acyl-carrier protein) phosphodiesterase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.
  
  
 0.434
ssuD
Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.
  
  
 0.425
Rfer_1773
Putative nitrilotriacetate monooxygenase component A protein.
  
  
 0.422
Rfer_1288
FAD linked oxidase-like.
   
  
 0.416
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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