Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_2633Spermidine synthase-like. (255 aa)    
Predicted Functional Partners:
Rfer_0346
Agmatinase; Belongs to the arginase family.
  
 
 0.935
mtnP
Methylthioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates; Belongs to the PNP/MTAP phosphorylase family. MTAP subfamily.
 
 
 0.930
Rfer_2564
Protein of unknown function DUF152; Belongs to the multicopper oxidase YfiH/RL5 family.
    
  0.902
Rfer_0351
Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
  0.901
Rfer_0785
Putative spermidine synthase.
     
  0.900
Rfer_2631
Glutathione S-transferase-like.
  
 
 0.775
Rfer_2632
DSBA oxidoreductase.
       0.773
Rfer_2629
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
  
    0.520
Rfer_2630
Metal dependent phosphohydrolase.
       0.514
Rfer_0557
Flagellar motor switch protein FliM.
   
   0.469
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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