Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Rfer_2665Methylation. (189 aa)    
Predicted Functional Partners:
Rfer_2660
Methylation.
 
  
 0.978
Rfer_2663
Putative type-4 fimbrial biogenesis pily1-related signal peptide protein.
 
  
 0.975
Rfer_2662
Putative transmembrane protein.
 
  
 0.965
Rfer_2661
Putative transmembrane protein.
 
  
 0.964
Rfer_2664
Methylation.
 
  
 0.960
Rfer_2920
Fimbrial assembly.
 
  
 0.782
Rfer_2666
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
       0.764
Rfer_2921
Pilus assembly protein, PilO.
 
  
 0.756
Rfer_2257
Type IV pilus assembly PilZ.
  
   
 0.727
Rfer_2922
Pilus assembly protein, PilQ.
  
  
 0.722
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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