Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_2705Putative lipase / esterase protein. (429 aa)    
Predicted Functional Partners:
Rfer_2221
Conserved hypothetical protein.
  
     0.729
Rfer_2706
Membrane protein involved in aromatic hydrocarbon degradation.
  
    0.657
Rfer_2477
Conserved hypothetical protein.
  
     0.654
Rfer_3022
Putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane; Participates in the degradation of poly-3-hydroxybutyrate (PHB). It works downstream of poly(3-hydroxybutyrate) depolymerase, hydrolyzing D(-)-3-hydroxybutyrate oligomers of various length (3HB- oligomers) into 3HB-monomers; Belongs to the D-(-)-3-hydroxybutyrate oligomer hydrolase family.
  
     0.536
Rfer_0117
AAA ATPase.
  
     0.507
Rfer_1099
Extracellular solute-binding protein, family 1.
  
     0.497
Rfer_2707
Hypothetical protein.
       0.493
Rfer_3041
ABC transporter.
  
   
 0.487
Rfer_3476
17 kDa surface antigen.
  
     0.472
Rfer_1234
Lipopolysaccharide biosynthesis.
  
     0.458
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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