Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Rfer_0167 | Rfer_2552 | Rfer_0167 | Rfer_2552 | Beta-lactamase-like. | Glyoxalase I. | 0.930 |
| Rfer_0167 | Rfer_2801 | Rfer_0167 | Rfer_2801 | Beta-lactamase-like. | Lactoylglutathione lyase. | 0.907 |
| Rfer_0167 | gloB | Rfer_0167 | Rfer_1462 | Beta-lactamase-like. | Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid. | 0.911 |
| Rfer_0344 | Rfer_0929 | Rfer_0344 | Rfer_0929 | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | D-serine deaminase. | 0.905 |
| Rfer_0344 | Rfer_2144 | Rfer_0344 | Rfer_2144 | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding. | 0.834 |
| Rfer_0344 | Rfer_2552 | Rfer_0344 | Rfer_2552 | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | Glyoxalase I. | 0.831 |
| Rfer_0344 | Rfer_2801 | Rfer_0344 | Rfer_2801 | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | Lactoylglutathione lyase. | 0.825 |
| Rfer_0344 | Rfer_3829 | Rfer_0344 | Rfer_3829 | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding. | 0.849 |
| Rfer_0344 | ilvA | Rfer_0344 | Rfer_0733 | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.915 |
| Rfer_0344 | trpB-2 | Rfer_0344 | Rfer_1788 | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | Tryptophan synthase, beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.935 |
| Rfer_0929 | Rfer_0344 | Rfer_0929 | Rfer_0344 | D-serine deaminase. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.905 |
| Rfer_0929 | Rfer_2144 | Rfer_0929 | Rfer_2144 | D-serine deaminase. | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding. | 0.808 |
| Rfer_0929 | Rfer_2552 | Rfer_0929 | Rfer_2552 | D-serine deaminase. | Glyoxalase I. | 0.808 |
| Rfer_0929 | Rfer_2801 | Rfer_0929 | Rfer_2801 | D-serine deaminase. | Lactoylglutathione lyase. | 0.808 |
| Rfer_0929 | Rfer_3829 | Rfer_0929 | Rfer_3829 | D-serine deaminase. | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding. | 0.800 |
| Rfer_0929 | ilvA | Rfer_0929 | Rfer_0733 | D-serine deaminase. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.905 |
| Rfer_2144 | Rfer_0344 | Rfer_2144 | Rfer_0344 | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.834 |
| Rfer_2144 | Rfer_0929 | Rfer_2144 | Rfer_0929 | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding. | D-serine deaminase. | 0.808 |
| Rfer_2144 | Rfer_2552 | Rfer_2144 | Rfer_2552 | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding. | Glyoxalase I. | 0.922 |
| Rfer_2144 | Rfer_2801 | Rfer_2144 | Rfer_2801 | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding. | Lactoylglutathione lyase. | 0.922 |
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