Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rfer_2845AMP-dependent synthetase and ligase. (540 aa)    
Predicted Functional Partners:
Rfer_3519
acyl-CoA dehydrogenase-like.
 
 
 0.917
Rfer_1959
acyl-CoA dehydrogenase-like.
  
 
 0.906
Rfer_2268
acyl-CoA dehydrogenase-like.
  
 
 0.906
Rfer_1006
AMP-dependent synthetase and ligase.
  
  
 
0.903
Rfer_2393
AMP-dependent synthetase and ligase.
  
  
 
0.902
Rfer_2846
Alpha/beta hydrolase.
  
 
 0.773
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.570
Rfer_2145
AMP-dependent synthetase and ligase.
  
 0.486
Rfer_3270
NADH dehydrogenase (quinone).
    
 
 0.467
Rfer_3858
Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit.
    
 
 0.467
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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