STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_2852Putative di-heme cytochrome c. (437 aa)    
Predicted Functional Partners:
Rfer_4081
Hypothetical protein.
 
 
 0.870
Rfer_0259
Conserved hypothetical protein.
 
 
 0.765
Rfer_4073
Cytochrome c family protein.
 
  
 0.717
Rfer_4084
PT repeat protein.
 
   
 0.708
Rfer_0335
Conserved hypothetical protein.
  
     0.706
Rfer_3094
Molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.680
Rfer_1438
Cytochrome c, class I.
 
   
 0.666
Rfer_1174
Hypothetical protein.
  
     0.651
Rfer_4085
Cytochrome c, class I.
 
   
 0.633
Rfer_2855
Periplasmic sensor signal transduction histidine kinase.
 
 
 
 0.630
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.