Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_2871Tripartite ATP-independent periplasmic transporter, DctQ component. (202 aa)    
Predicted Functional Partners:
Rfer_2872
TRAP dicarboxylate transporter- DctM subunit.
 
 
 0.996
Rfer_1482
Tripartite ATP-independent periplasmic transporter, DctQ component.
   
 
  0.905
Rfer_3482
Tripartite ATP-independent periplasmic transporter, DctQ component.
   
 
  0.905
Rfer_0449
Tripartite ATP-independent periplasmic transporter, DctQ component.
   
 
  0.900
Rfer_1841
Tripartite ATP-independent periplasmic transporter, DctQ component.
   
 
  0.900
Rfer_2568
Conserved hypothetical protein.
   
 
  0.900
Rfer_4195
Tripartite ATP-independent periplasmic transporter, DctQ component.
   
 
  0.900
Rfer_2873
Twin-arginine translocation pathway signal; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.817
Rfer_2874
Twin-arginine translocation pathway signal; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.817
Rfer_2870
Transcriptional regulator of molybdate metabolism, LysR family.
  
    0.506
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.