STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3100Transcriptional regulator, RpiR family. (319 aa)    
Predicted Functional Partners:
Rfer_3101
Peptidase T2, asparaginase 2.
 
    0.893
Rfer_3107
D-aminopeptidase DppA. Metallo peptidase. MEROPS family M55.
 
     0.802
Rfer_3102
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily.
  
    0.699
Rfer_3103
Extracellular solute-binding protein, family 5.
 
     0.671
Rfer_0928
Transcriptional regulator, RpiR family.
  
     0.603
Rfer_3106
Aminopeptidase DmpA. Serine peptidase. MEROPS family S58.
 
    0.576
Rfer_3409
Peptidase T2, asparaginase 2.
 
    0.538
Rfer_3108
Aspartate racemase; Belongs to the aspartate/glutamate racemases family.
 
     0.532
Rfer_3099
Hypothetical protein.
       0.499
Rfer_1124
Transcriptional regulator, RpiR family.
  
     0.485
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.