STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3103Extracellular solute-binding protein, family 5. (519 aa)    
Predicted Functional Partners:
Rfer_3104
Binding-protein-dependent transport systems inner membrane component.
 0.994
Rfer_3105
Binding-protein-dependent transport systems inner membrane component.
 0.993
Rfer_3102
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily.
 
 
 0.977
Rfer_0932
Binding-protein-dependent transport systems inner membrane component.
 
 0.855
Rfer_1952
Binding-protein-dependent transport systems inner membrane component.
 
 0.848
Rfer_0933
Binding-protein-dependent transport systems inner membrane component.
 
 0.847
Rfer_0984
Binding-protein-dependent transport systems inner membrane component.
 
 0.839
Rfer_0983
Binding-protein-dependent transport systems inner membrane component.
 
 0.836
Rfer_1953
Binding-protein-dependent transport systems inner membrane component.
 
 0.828
Rfer_3107
D-aminopeptidase DppA. Metallo peptidase. MEROPS family M55.
 
     0.804
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.