Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_31335-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase. (284 aa)    
Predicted Functional Partners:
Rfer_3128
Short-chain dehydrogenase/reductase SDR.
 
 0.949
Rfer_3135
Amidohydrolase 2.
 
     0.932
Rfer_3134
Mandelate racemase/muconate lactonizing enzyme.
 
   
 0.888
Rfer_3136
Short-chain dehydrogenase/reductase SDR.
 
 
 0.856
Rfer_3138
Conserved hypothetical protein.
 
     0.789
Rfer_3488
Precorrin 3B synthase CobZ.
  
    0.775
Rfer_1637
Dimethylmenaquinone methyltransferase.
    
 0.757
Rfer_3137
Methyl-accepting chemotaxis sensory transducer.
       0.628
Rfer_3132
Porin, Gram-negative type.
       0.446
Rfer_0495
HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.414
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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