STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_31335-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase. (284 aa)    
Predicted Functional Partners:
Rfer_3135
Amidohydrolase 2.
 
     0.928
Rfer_3134
Mandelate racemase/muconate lactonizing enzyme.
 
  
 0.895
Rfer_3136
Short-chain dehydrogenase/reductase SDR.
 
 
 0.865
Rfer_3138
Conserved hypothetical protein.
 
     0.776
Rfer_1637
Dimethylmenaquinone methyltransferase.
    
 0.758
Rfer_3137
Methyl-accepting chemotaxis sensory transducer.
       0.628
Rfer_3488
Precorrin 3B synthase CobZ.
  
  
 0.623
Rfer_3128
Short-chain dehydrogenase/reductase SDR.
 
 
 0.534
gshA
Glutamate-cysteine ligase; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.
  
    0.497
Rfer_3132
Porin, Gram-negative type.
       0.446
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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