Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_3136Short-chain dehydrogenase/reductase SDR. (258 aa)    
Predicted Functional Partners:
Rfer_3135
Amidohydrolase 2.
 
  
  0.992
Rfer_3138
Conserved hypothetical protein.
 
   
 0.895
Rfer_3133
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase.
 
 
 0.856
Rfer_3134
Mandelate racemase/muconate lactonizing enzyme.
 
   
 0.839
Rfer_3137
Methyl-accepting chemotaxis sensory transducer.
       0.678
Rfer_2145
AMP-dependent synthetase and ligase.
  
 
 0.628
Rfer_2259
Ankyrin.
   
 0.504
Rfer_2468
Cytochrome c, class I.
  
     0.482
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.454
Rfer_2386
3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase.
  
 0.447
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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