Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rfer_3153MotA/TolQ/ExbB proton channel. (221 aa)    
Predicted Functional Partners:
Rfer_3154
Biopolymer transport protein ExbD/TolR.
 
 
 0.988
Rfer_3412
TonB-like.
 
 
 0.851
Rfer_0757
Biopolymer transport protein ExbD/TolR.
 
 
 0.755
Rfer_1158
Biopolymer transport protein ExbD/TolR.
 
 
 0.696
Rfer_2673
Biopolymer transport protein ExbD/TolR.
 
 
 0.696
Rfer_0777
ABC transporter related.
 
   
 0.693
Rfer_2674
TonB-like.
 
 
 0.615
Rfer_1118
Biopolymer transport protein ExbD/TolR.
  
 
 0.600
Rfer_1119
Biopolymer transport protein ExbD/TolR.
  
 
 0.600
Rfer_1532
Biopolymer transport protein ExbD/TolR.
  
 
 0.600
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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