STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3154Biopolymer transport protein ExbD/TolR. (142 aa)    
Predicted Functional Partners:
Rfer_3153
MotA/TolQ/ExbB proton channel.
 
 
 0.984
Rfer_3412
TonB-like.
 
 
 0.768
tolQ
MotA/TolQ/ExbB proton channel; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.658
Rfer_2672
MotA/TolQ/ExbB proton channel.
 
 
 0.658
Rfer_0756
MotA/TolQ/ExbB proton channel.
 
 
 0.636
Rfer_3174
MotA/TolQ/ExbB proton channel.
 
 
 0.633
Rfer_1120
MotA/TolQ/ExbB proton channel.
 
 
 0.631
Rfer_1531
MotA/TolQ/ExbB proton channel.
  
 
 0.581
Rfer_1117
Conserved hypothetical protein.
  
 
 0.566
Rfer_1159
TonB-like.
  
 
 0.566
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.