Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_3159Alpha/beta hydrolase. (268 aa)    
Predicted Functional Partners:
Rfer_3160
O-acetylhomoserine/O-acetylserine sulfhydrylase.
     
 0.813
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
     
 0.682
Rfer_1400
Putative membrane protein.
  
     0.620
Rfer_2145
AMP-dependent synthetase and ligase.
  
 
 0.581
Rfer_2386
3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase.
 
 0.542
Rfer_1645
acyl-CoA dehydrogenase-like.
  
  0.518
Rfer_2259
Ankyrin.
  
 0.513
Rfer_2098
Conserved hypothetical protein.
  
  
 0.488
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.473
Rfer_3328
acyl-CoA dehydrogenase-like.
  
  0.472
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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