Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rfer_3166ABC transporter related. (508 aa)    
Predicted Functional Partners:
Rfer_3164
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.999
Rfer_3165
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.998
Rfer_3163
Basic membrane lipoprotein.
 
 
 0.994
Rfer_3296
Basic membrane lipoprotein.
 
 
 0.986
Rfer_3942
Serine/threonine protein kinase with Chase2 sensor.
  
    0.496
Rfer_3167
Sporulation related.
       0.468
Rfer_1902
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.440
Rfer_0439
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.422
Rfer_3130
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.421
Rfer_2558
Assimilatory nitrite reductase (NAD(P)H) small subunit.
   
    0.419
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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