Rfer_3175 protein (Rhodoferax ferrireducens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Rfer_3175

Thermostable carboxypeptidase 1; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues. (496 aa)

Predicted Functional Partners:

Rfer_3176

0.700

lolA

0.645

Rfer_3174

0.615

Rfer_3173

0.512

Rfer_3178

0.505

Rfer_3179

0.400

Your Current Organism:

Rhodoferax ferrireducens

NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Rfer_3173	Rfer_3174	Rfer_3173	Rfer_3174	Conserved hypothetical protein.	MotA/TolQ/ExbB proton channel.	0.935
Rfer_3173	Rfer_3175	Rfer_3173	Rfer_3175	Conserved hypothetical protein.	Thermostable carboxypeptidase 1; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.	0.512
Rfer_3173	Rfer_3176	Rfer_3173	Rfer_3176	Conserved hypothetical protein.	Recombination protein MgsA.	0.462
Rfer_3173	lolA	Rfer_3173	Rfer_3177	Conserved hypothetical protein.	Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.457
Rfer_3174	Rfer_3173	Rfer_3174	Rfer_3173	MotA/TolQ/ExbB proton channel.	Conserved hypothetical protein.	0.935
Rfer_3174	Rfer_3175	Rfer_3174	Rfer_3175	MotA/TolQ/ExbB proton channel.	Thermostable carboxypeptidase 1; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.	0.615
Rfer_3174	Rfer_3176	Rfer_3174	Rfer_3176	MotA/TolQ/ExbB proton channel.	Recombination protein MgsA.	0.552
Rfer_3174	Rfer_3178	Rfer_3174	Rfer_3178	MotA/TolQ/ExbB proton channel.	DNA translocase FtsK.	0.440
Rfer_3174	lolA	Rfer_3174	Rfer_3177	MotA/TolQ/ExbB proton channel.	Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.535
Rfer_3175	Rfer_3173	Rfer_3175	Rfer_3173	Thermostable carboxypeptidase 1; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.	Conserved hypothetical protein.	0.512
Rfer_3175	Rfer_3174	Rfer_3175	Rfer_3174	Thermostable carboxypeptidase 1; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.	MotA/TolQ/ExbB proton channel.	0.615
Rfer_3175	Rfer_3176	Rfer_3175	Rfer_3176	Thermostable carboxypeptidase 1; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.	Recombination protein MgsA.	0.700
Rfer_3175	Rfer_3178	Rfer_3175	Rfer_3178	Thermostable carboxypeptidase 1; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.	DNA translocase FtsK.	0.505
Rfer_3175	Rfer_3179	Rfer_3175	Rfer_3179	Thermostable carboxypeptidase 1; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.	Thioredoxin reductase.	0.400
Rfer_3175	lolA	Rfer_3175	Rfer_3177	Thermostable carboxypeptidase 1; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.	Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.645
Rfer_3176	Rfer_3173	Rfer_3176	Rfer_3173	Recombination protein MgsA.	Conserved hypothetical protein.	0.462
Rfer_3176	Rfer_3174	Rfer_3176	Rfer_3174	Recombination protein MgsA.	MotA/TolQ/ExbB proton channel.	0.552
Rfer_3176	Rfer_3175	Rfer_3176	Rfer_3175	Recombination protein MgsA.	Thermostable carboxypeptidase 1; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.	0.700
Rfer_3176	Rfer_3178	Rfer_3176	Rfer_3178	Recombination protein MgsA.	DNA translocase FtsK.	0.775
Rfer_3176	Rfer_3179	Rfer_3176	Rfer_3179	Recombination protein MgsA.	Thioredoxin reductase.	0.569

page 1 of 2

Server load: low (12%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Textmining

Co-expression

Databases

Fusion

© STRING Consortium 2026

Credits

Access

Info

About