Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_3196ApbE-like lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family. (344 aa)    
Predicted Functional Partners:
Rfer_3198
FMN-binding.
 
  
 0.821
Rfer_3197
Cytochrome c, class I.
       0.732
Rfer_3209
Pyruvate flavodoxin/ferredoxin oxidoreductase-like.
     
 0.596
Rfer_3199
Twin-arginine translocation pathway signal.
 
  
 0.585
Rfer_3202
Putative transmembrane protein.
 
   
 0.509
Rfer_3195
Short-chain dehydrogenase/reductase SDR.
       0.508
Rfer_3200
Periplasmic copper-binding.
 
   
 0.501
Rfer_2341
Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
 
   
 0.472
Rfer_3194
Uncharacterized protein UPF0065.
       0.450
Rfer_3203
NosL.
 
   
 0.429
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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