Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3205Conserved hypothetical protein. (119 aa)    
Predicted Functional Partners:
Rfer_3204
Conserved hypothetical protein.
       0.797
Rfer_3200
Periplasmic copper-binding.
       0.784
Rfer_3202
Putative transmembrane protein.
       0.784
Rfer_3203
NosL.
       0.770
Rfer_3201
ABC transporter related.
       0.757
Rfer_3206
Putative lipoprotein involved in nitrous oxide reduction.
       0.645
Rfer_3199
Twin-arginine translocation pathway signal.
       0.572
Rfer_3207
Conserved hypothetical protein.
       0.542
Rfer_3198
FMN-binding.
       0.539
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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