STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3206Putative lipoprotein involved in nitrous oxide reduction. (103 aa)    
Predicted Functional Partners:
Rfer_3200
Periplasmic copper-binding.
 
 
 0.989
Rfer_3202
Putative transmembrane protein.
 
 
 0.986
Rfer_3201
ABC transporter related.
 
 
 0.955
Rfer_3198
FMN-binding.
 
  
 0.949
Rfer_3199
Twin-arginine translocation pathway signal.
 
  
 0.925
Rfer_3207
Conserved hypothetical protein.
 
     0.848
Rfer_3204
Conserved hypothetical protein.
       0.647
Rfer_3205
Conserved hypothetical protein.
       0.647
Rfer_3203
NosL.
 
    
0.627
Rfer_0135
Peptidase U32.
 
    0.618
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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