STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3208Glutamate synthase (NADPH) small chain; Sulfide dehydrogenase (flavoprotein) subunit SudB / sulfide dehydrogenase (flavoprotein) subunit SudA. (947 aa)    
Predicted Functional Partners:
Rfer_2933
Glutamate synthase (NADH) large subunit.
 0.999
pyrD
Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
 
 0.991
carB
Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family.
  
 0.990
carA
Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family.
  
 
 0.988
Rfer_3209
Pyruvate flavodoxin/ferredoxin oxidoreductase-like.
 
  
 0.982
Rfer_2934
Glutamate synthase (NADH) small subunit.
 
0.961
Rfer_3299
Oxidoreductase FAD/NAD(P)-binding.
  
 0.956
Rfer_0350
L-glutamine synthetase.
  
 
 0.951
Rfer_2979
L-glutamine synthetase.
  
 
 0.951
Rfer_2811
L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.941
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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