Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_3284AMP-dependent synthetase and ligase. (510 aa)    
Predicted Functional Partners:
Rfer_3283
Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.842
Rfer_0868
Carbamoyl-phosphate synthase L chain, ATP-binding.
  
 
 0.824
Rfer_3358
Triacylglycerol lipase.
     
 0.803
Rfer_3285
Short-chain dehydrogenase/reductase SDR.
  
   0.797
Rfer_4067
AMP-dependent synthetase and ligase.
 
 
0.731
Rfer_3503
AMP-dependent synthetase and ligase.
 
 
0.728
Rfer_2479
AMP-dependent synthetase and ligase.
 
 
0.717
Rfer_3542
AMP-dependent synthetase and ligase.
 
 
0.710
Rfer_0545
AMP-dependent synthetase and ligase.
  
  
 
0.702
Rfer_3752
AMP-dependent synthetase and ligase.
  
  
 
0.699
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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