Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_3288NADH-ubiquinone oxidoreductase, chain 49kDa. (519 aa)    
Predicted Functional Partners:
Rfer_3287
NADH ubiquinone oxidoreductase, 20 kDa subunit.
 
 
 0.999
Rfer_3289
NADH dehydrogenase (quinone).
 
 
 0.999
Rfer_3292
NADH dehydrogenase (quinone).
 
 
 0.999
Rfer_3281
NADH ubiquinone oxidoreductase, 20 kDa subunit.
 
 
 0.998
Rfer_3290
Hydrogenase 4 membrane component.
 
  
 0.997
Rfer_3291
Respiratory-chain NADH dehydrogenase, subunit 1.
 
 
 0.997
Rfer_3276
NADH dehydrogenase (quinone).
 
 
 0.996
Rfer_3279
NADH/Ubiquinone/plastoquinone (complex I).
 
 
 0.996
Rfer_3277
NAD-dependent dehydrogenase subunit.
 
 
 0.990
Rfer_3269
Formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.956
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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