STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3306Iron permease FTR1. (273 aa)    
Predicted Functional Partners:
Rfer_3307
Conserved hypothetical protein.
 
   
 0.939
Rfer_2758
Extracellular solute-binding protein, family 1.
   
  
 0.795
Rfer_2619
ABC transporter related.
   
  
 0.700
Rfer_1441
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding.
  
    0.625
Rfer_2621
Periplasmic binding protein.
   
  
 0.619
Rfer_2623
Periplasmic binding protein.
   
  
 0.619
Rfer_0619
TonB-dependent receptor.
  
  
 0.618
Rfer_0418
Heavy metal translocating P-type ATPase.
  
  
 0.561
Rfer_3368
Conserved hypothetical protein.
  
     0.544
Rfer_1527
Protein of unknown function DUF214.
  
  
 0.527
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.