Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3310Conserved hypothetical protein. (166 aa)    
Predicted Functional Partners:
Rfer_2954
Putative transmembrane protein.
  
     0.588
Rfer_2289
Putative transmembrane protein.
  
     0.532
Rfer_2656
Hypothetical protein.
  
     0.509
Rfer_3949
Transcriptional regulator, MarR family.
  
     0.508
Rfer_1872
Response regulator receiver domain protein.
  
     0.501
Rfer_1972
Putative transcriptional regulator.
  
     0.496
Rfer_3437
Hypothetical protein.
  
     0.487
Rfer_3812
Activator of osmoprotectant transporter.
  
     0.476
Rfer_2897
Conserved hypothetical protein.
  
     0.474
Rfer_1390
Phosphoesterase, DHHA1.
  
     0.472
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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