Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Rfer_3373Two component transcriptional regulator, LuxR family. (262 aa)    
Predicted Functional Partners:
Rfer_3372
Putative signal transduction histidine kinase.
 
 
 0.957
Rfer_1538
Putative PAS/PAC sensor protein.
 
 
 0.853
Rfer_1874
Histidine kinase.
 
 
 0.851
Rfer_3744
PAS/PAC sensor signal transduction histidine kinase.
 
 
 0.850
Rfer_0564
Putative signal transduction histidine kinase.
 
 
 0.843
Rfer_0893
Response regulator receiver sensor signal transduction histidine kinase.
 
 
 0.833
Rfer_0781
Putative signal transduction histidine kinase.
 
 
 0.821
Rfer_1768
Multi-sensor hybrid histidine kinase.
  
 
 0.780
Rfer_0782
Two component transcriptional regulator, LuxR family.
  
     0.774
Rfer_1539
Two component transcriptional regulator, LuxR family.
  
     0.773
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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