STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3397Two component transcriptional regulator, LuxR family. (328 aa)    
Predicted Functional Partners:
Rfer_3398
Periplasmic sensor hybrid histidine kinase.
 
0.932
Rfer_1768
Multi-sensor hybrid histidine kinase.
 
0.917
Rfer_1082
Histidine kinase.
   
 0.915
Rfer_0055
Metal dependent phosphohydrolase.
  
   0.911
Rfer_3547
Response regulator receiver modulated diguanylate cyclase.
 
  
0.911
Rfer_1305
Diguanylate cyclase.
 
 
  
 0.905
Rfer_3638
Metal dependent phosphohydrolase.
 
      0.898
Rfer_2293
Metal dependent phosphohydrolase.
 
      0.897
Rfer_1887
Diguanylate cyclase.
 
 
  
 0.852
Rfer_2495
Diguanylate cyclase.
 
 
  
 0.807
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.