Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rfer_3397Two component transcriptional regulator, LuxR family. (328 aa)    
Predicted Functional Partners:
Rfer_3398
Periplasmic sensor hybrid histidine kinase.
 
 
0.927
Rfer_1082
Histidine kinase.
   
 0.913
Rfer_3547
Response regulator receiver modulated diguanylate cyclase.
 
  
0.912
Rfer_0055
Metal dependent phosphohydrolase.
  
 
 0.909
Rfer_1305
Diguanylate cyclase.
 
 
  
 0.907
Rfer_3638
Metal dependent phosphohydrolase.
 
      0.898
Rfer_2293
Metal dependent phosphohydrolase.
 
      0.897
Rfer_1887
Diguanylate cyclase.
 
 
  
 0.854
Rfer_1768
Multi-sensor hybrid histidine kinase.
 
0.835
Rfer_2495
Diguanylate cyclase.
 
 
  
 0.810
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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