Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_3454Histidine kinase. (623 aa)    
Predicted Functional Partners:
Rfer_3453
Two component, sigma54 specific, transcriptional regulator, Fis family.
 0.994
Rfer_3455
Sodium:dicarboxylate symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
 
   
 0.664
Rfer_1768
Multi-sensor hybrid histidine kinase.
  
 
 0.650
Rfer_3716
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
 
    0.571
Rfer_3082
Two component transcriptional regulator, LuxR family.
 
 
 0.509
Rfer_1135
Two component transcriptional regulator, LuxR family.
 
 
 0.506
Rfer_3121
Periplasmic sensor signal transduction histidine kinase.
  
 
 
 0.477
Rfer_3932
Diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s).
  
 
 0.474
Rfer_2038
Periplasmic sensor hybrid histidine kinase.
 
 0.471
Rfer_3561
Lipoprotein, putative.
  
     0.455
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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