Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_3471Diguanylate cyclase. (618 aa)    
Predicted Functional Partners:
Rfer_3470
Hypothetical protein.
       0.773
Rfer_3764
Diguanylate cyclase/phosphodiesterase.
 
  
 0.707
Rfer_1825
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
0.689
Rfer_2262
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
0.678
Rfer_3932
Diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s).
 
 
0.668
Rfer_2030
Diguanylate cyclase/phosphodiesterase.
 
  
 0.625
Rfer_1982
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
0.605
Rfer_0891
Metal dependent phosphohydrolase.
 
 
 0.593
Rfer_1768
Multi-sensor hybrid histidine kinase.
  
 
 0.573
Rfer_0895
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
0.555
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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