Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3533Conserved hypothetical protein. (112 aa)    
Predicted Functional Partners:
Rfer_3534
Putative zinc protease protein.
       0.814
Rfer_3527
Poly granule associated.
 
     0.767
Rfer_2656
Hypothetical protein.
 
     0.744
Rfer_3530
Conserved hypothetical protein.
  
     0.693
Rfer_3535
Conserved hypothetical protein.
 
     0.689
Rfer_3949
Transcriptional regulator, MarR family.
  
     0.687
Rfer_0328
Conserved hypothetical protein.
  
     0.672
Rfer_0804
YgfB; YecA.
  
     0.661
Rfer_1293
Hypothetical protein.
 
     0.636
Rfer_0011
Conserved hypothetical protein.
  
     0.630
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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