STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3536Putative phenylacetate-CoA ligase. (418 aa)    
Predicted Functional Partners:
Rfer_2239
Coenzyme F390 synthetase-like.
  
  
  0.925
Rfer_0676
Putative CapK protein.
  
  
 
0.918
Rfer_3537
ABC transporter related.
    0.912
Rfer_3538
Conserved hypothetical protein.
 
    0.878
Rfer_3539
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.870
Rfer_3542
AMP-dependent synthetase and ligase.
 
    0.845
Rfer_3540
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.835
Rfer_3541
ABC transporter related.
 
    0.829
Rfer_4067
AMP-dependent synthetase and ligase.
 
    0.738
Rfer_4065
Extracellular ligand-binding receptor.
 
    0.697
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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