STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_3540Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (309 aa)    
Predicted Functional Partners:
Rfer_3539
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.997
Rfer_3541
ABC transporter related.
 
  
 0.967
Rfer_3542
AMP-dependent synthetase and ligase.
 
    0.948
Rfer_3538
Conserved hypothetical protein.
 
  
 0.939
Rfer_3537
ABC transporter related.
 
  
 0.901
Rfer_4064
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.864
Rfer_4062
ABC transporter related.
 
  
 0.857
Rfer_4066
ABC transporter related.
 
  
 0.852
Rfer_3536
Putative phenylacetate-CoA ligase.
 
    0.835
Rfer_1001
ABC transporter related.
 
  
 0.811
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.